Downloads

Download the full database dump and CSV files for nodes and edges for the full database and selected views:

• Full Database
  rnakgv20.dump (full RNA-KG v2.0 dump in Neo4j) | Raw data (Zenodo)
  nodes.csv | edges.csv | statistics.xlsx
• Human Disease Molecular Mechanisms View
  View on disease mechanisms partially based on the integration of PheKnowLator KG in RNA-KG v2.0
  nodes.csv | edges.csv | statistics.xlsx
• lncRNAdiseaseGO View
  View centered on interactions involving lncRNAs, diseases, and Gene Ontology annotations
  nodes.csv | edges.csv | statistics.xlsx
• lncRNAtRF View
  View centered on interactions involving lncRNAs and tRNA fragments
  nodes.csv | edges.csv | statistics.xlsx
• miRNAdisease View
  View centered on interactions involving miRNAs and diseases
  ⚠️ This is the only view provided in tsv because we used it for experiments related to "context-aware" link prediction. In the header, 'type' correspond to Neo4j's ':LABEL', 'name' --> 'URI:ID', 'predicate' --> ':TYPE', 'subject' --> ':START_ID', and 'object' -->':END_ID'
  nodes.tsv | edges.tsv | statistics.xlsx
• miRNAdiseaseGO View
  View centered on interactions involving miRNAs, diseases, and GO annotations
  nodes.csv | edges.csv | statistics.xlsx
• piRNAdiseaseGO View
  View centered on interactions involving piRNAs, diseases, and GO annotations
  nodes.csv | edges.csv | statistics.xlsx
• sncRNAphysInt View
  View centered on physical interactions involving small ncRNAs
  nodes.csv | edges.csv | statistics.xlsx